biology/mummer - The NetBSD Packages Collection

System for aligning whole genome sequences

Mummer is a system for aligning whole genome sequences. Using an efficient
data structure called a suffix tree, the system is able rapidly to align
sequences containing millions of nucleotides whether in complete or draft
form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s
of contigs from a shotgun sequencing project with ease, and will align them to
another set of contigs or a genome using the NUCmer program included with the
system.

Build dependencies

pkgtools/mktools devel/gmake pkgtools/cwrappers

Runtime dependencies

lang/perl5

Binary packages

OSArchitectureVersion
NetBSD 10.0aarch64mummer-3.20nb10.tgz
NetBSD 10.0aarch64mummer-3.20nb10.tgz
NetBSD 10.0aarch64mummer-3.20nb10.tgz
NetBSD 10.0aarch64ebmummer-3.20nb10.tgz
NetBSD 10.0earmv6hfmummer-3.20nb10.tgz
NetBSD 10.0earmv6hfmummer-3.20nb10.tgz
NetBSD 10.0earmv6hfmummer-3.20nb10.tgz
NetBSD 10.0earmv7hfmummer-3.20nb10.tgz
NetBSD 10.0earmv7hfmummer-3.20nb10.tgz
NetBSD 10.0earmv7hfmummer-3.20nb10.tgz
NetBSD 10.0i386mummer-3.20nb10.tgz
NetBSD 10.0i386mummer-3.20nb10.tgz
NetBSD 10.0powerpcmummer-3.20nb10.tgz
NetBSD 10.0x86_64mummer-3.20nb10.tgz
NetBSD 10.0_BETAx86_64mummer-3.20nb10.tgz
NetBSD 8.0i386mummer-3.20nb10.tgz
NetBSD 8.0i386mummer-3.20nb10.tgz
NetBSD 8.0powerpcmummer-3.20nb10.tgz
NetBSD 8.0powerpcmummer-3.20nb10.tgz
NetBSD 8.0powerpcmummer-3.20nb10.tgz
NetBSD 8.0powerpcmummer-3.20nb10.tgz
NetBSD 8.0x86_64mummer-3.20nb10.tgz
NetBSD 8.0x86_64mummer-3.20nb10.tgz
NetBSD 8.0x86_64mummer-3.20nb10.tgz
NetBSD 9.0aarch64mummer-3.20nb10.tgz
NetBSD 9.0aarch64mummer-3.20nb10.tgz
NetBSD 9.0aarch64mummer-3.20nb10.tgz
NetBSD 9.0alphamummer-3.20nb10.tgz
NetBSD 9.0alphamummer-3.20nb10.tgz
NetBSD 9.0earmmummer-3.20nb10.tgz
NetBSD 9.0earmv6hfmummer-3.20nb10.tgz
NetBSD 9.0earmv6hfmummer-3.20nb10.tgz
NetBSD 9.0earmv6hfmummer-3.20nb10.tgz
NetBSD 9.0earmv7hfmummer-3.20nb10.tgz
NetBSD 9.0earmv7hfmummer-3.20nb10.tgz
NetBSD 9.0earmv7hfmummer-3.20nb10.tgz
NetBSD 9.0i386mummer-3.20nb10.tgz
NetBSD 9.0i386mummer-3.20nb10.tgz
NetBSD 9.0m68kmummer-3.20nb10.tgz
NetBSD 9.0m68kmummer-3.20nb10.tgz
NetBSD 9.0m68kmummer-3.20nb10.tgz
NetBSD 9.0mips64ebmummer-3.20nb10.tgz
NetBSD 9.0powerpcmummer-3.20nb10.tgz
NetBSD 9.0powerpcmummer-3.20nb10.tgz
NetBSD 9.0powerpcmummer-3.20nb10.tgz
NetBSD 9.0sh3elmummer-3.20nb10.tgz
NetBSD 9.0sh3elmummer-3.20nb10.tgz
NetBSD 9.0sparc64mummer-3.20nb10.tgz
NetBSD 9.0sparcmummer-3.20nb10.tgz
NetBSD 9.0sparcmummer-3.20nb10.tgz
NetBSD 9.0x86_64mummer-3.20nb10.tgz
NetBSD 9.0x86_64mummer-3.20nb10.tgz
NetBSD 9.3x86_64mummer-3.20nb10.tgz
NetBSD 9.3x86_64mummer-3.20nb10.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.