biology/bioperl - The NetBSD Packages Collection

Perl tools for computational molecular biology

The Bioperl Project is an international association of developers of open
source Perl tools for bioinformatics, genomics and life science research.

Bioperl is a collection of object-oriented Perl modules created by the
Bioperl Project.  It forms the basis of a large number of bioinformatics
and genomics applications.

Build dependencies

devel/p5-Test-Most textproc/p5-Text-Diff devel/p5-Module-Install pkgtools/cwrappers

Runtime dependencies

math/p5-Algorithm-Munkres devel/p5-Array-Compare biology/p5-Bio-ASN1-EntrezGene devel/p5-Clone devel/p5-Convert-Binary-C devel/p5-Data-Stag devel/p5-Error graphics/p5-GD devel/p5-Graph graphics/p5-GraphViz www/p5-HTML-Parser www/p5-HTML-TableExtract devel/p5-IO-String devel/p5-List-MoreUtils print/p5-PostScript net/p5-SOAP-Lite graphics/p5-SVG-Graph graphics/p5-SVG devel/p5-Set-Scalar devel/p5-Sort-Naturally math/p5-Spreadsheet-ParseExcel textproc/p5-XML-Parser textproc/p5-XML-SAX-Writer textproc/p5-XML-SAX textproc/p5-XML-Simple textproc/p5-XML-Twig textproc/p5-XML-Writer textproc/p5-YAML www/p5-libwww textproc/p5-libxml textproc/p5-XML-DOM lang/perl5 lang/perl5

Binary packages

OSArchitectureVersion
NetBSD 8.0earmv7hfbioperl-1.7.7.tgz
NetBSD 8.0earmv7hfbioperl-1.7.7.tgz
NetBSD 8.0earmv7hfbioperl-1.7.7.tgz
NetBSD 8.0i386bioperl-1.7.7.tgz
NetBSD 8.0i386bioperl-1.7.7.tgz
NetBSD 8.0i386bioperl-1.7.7.tgz
NetBSD 8.0x86_64bioperl-1.7.7.tgz
NetBSD 8.0x86_64bioperl-1.7.7.tgz
NetBSD 8.0x86_64bioperl-1.7.7.tgz
NetBSD 9.0aarch64bioperl-1.7.7.tgz
NetBSD 9.0aarch64bioperl-1.7.7.tgz
NetBSD 9.0aarch64bioperl-1.7.7.tgz
NetBSD 9.0earmv6hfbioperl-1.7.7.tgz
NetBSD 9.0earmv6hfbioperl-1.7.7.tgz
NetBSD 9.0earmv6hfbioperl-1.7.7.tgz
NetBSD 9.0earmv6hfbioperl-1.7.7.tgz
NetBSD 9.0earmv7hfbioperl-1.7.7.tgz
NetBSD 9.0earmv7hfbioperl-1.7.7.tgz
NetBSD 9.0earmv7hfbioperl-1.7.7.tgz
NetBSD 9.0earmv7hfbioperl-1.7.7.tgz
NetBSD 9.0i386bioperl-1.7.7.tgz
NetBSD 9.0i386bioperl-1.7.7.tgz
NetBSD 9.0i386bioperl-1.7.7.tgz
NetBSD 9.0x86_64bioperl-1.7.7.tgz
NetBSD 9.0x86_64bioperl-1.7.7.tgz
NetBSD 9.0x86_64bioperl-1.7.7.tgz
NetBSD 9.0x86_64bioperl-1.7.7.tgz
NetBSD 9.0x86_64bioperl-1.7.7.tgz
NetBSD 9.0x86_64bioperl-1.7.7.tgz
NetBSD 9.0x86_64bioperl-1.7.7.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

mysql
Enable MySQL support.
pgsql
Enable PostgreSQL support.
sqlite
Enable SQLite support.

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.