biology/kallisto - The NetBSD Packages Collection

Quantify abundances of transcripts from RNA-Seq data

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq
data, or more generally of target sequences using high-throughput sequencing
reads. It is based on the novel idea of pseudoalignment for rapidly determining
the compatibility of reads with targets, without the need for alignment.

Build dependencies

pkgtools/cwrappers devel/autoconf devel/cmake devel/gmake

Runtime dependencies

devel/hdf5 archivers/libaec devel/hdf5

Binary packages

OSArchitectureVersion
NetBSD 8.0earmv7hfkallisto-0.46.1.tgz
NetBSD 8.0earmv7hfkallisto-0.46.1.tgz
NetBSD 8.0earmv7hfkallisto-0.46.1.tgz
NetBSD 8.0i386kallisto-0.46.1.tgz
NetBSD 8.0i386kallisto-0.46.1.tgz
NetBSD 8.0i386kallisto-0.46.1.tgz
NetBSD 8.0powerpckallisto-0.46.1.tgz
NetBSD 8.0powerpckallisto-0.46.1.tgz
NetBSD 8.0powerpckallisto-0.46.1.tgz
NetBSD 8.0x86_64kallisto-0.46.1.tgz
NetBSD 8.0x86_64kallisto-0.46.1.tgz
NetBSD 8.0x86_64kallisto-0.46.1.tgz
NetBSD 9.0aarch64kallisto-0.46.1.tgz
NetBSD 9.0aarch64kallisto-0.46.1.tgz
NetBSD 9.0alphakallisto-0.46.1.tgz
NetBSD 9.0alphakallisto-0.46.1.tgz
NetBSD 9.0alphakallisto-0.46.1.tgz
NetBSD 9.0earmkallisto-0.46.1.tgz
NetBSD 9.0earmv6hfkallisto-0.46.1.tgz
NetBSD 9.0earmv6hfkallisto-0.46.1.tgz
NetBSD 9.0earmv6hfkallisto-0.46.1.tgz
NetBSD 9.0earmv7hfkallisto-0.46.1.tgz
NetBSD 9.0earmv7hfkallisto-0.46.1.tgz
NetBSD 9.0earmv7hfkallisto-0.46.1.tgz
NetBSD 9.0earmv7hfkallisto-0.46.1.tgz
NetBSD 9.0i386kallisto-0.46.1.tgz
NetBSD 9.0i386kallisto-0.46.1.tgz
NetBSD 9.0i386kallisto-0.46.1.tgz
NetBSD 9.0mips64ebkallisto-0.46.1.tgz
NetBSD 9.0mips64ebkallisto-0.46.1.tgz
NetBSD 9.0mips64ebkallisto-0.46.1.tgz
NetBSD 9.0powerpckallisto-0.46.1.tgz
NetBSD 9.0powerpckallisto-0.46.1.tgz
NetBSD 9.0powerpckallisto-0.46.1.tgz
NetBSD 9.0sparc64kallisto-0.46.1.tgz
NetBSD 9.0sparc64kallisto-0.46.1.tgz
NetBSD 9.0sparc64kallisto-0.46.1.tgz
NetBSD 9.0sparckallisto-0.46.1.tgz
NetBSD 9.0sparckallisto-0.46.1.tgz
NetBSD 9.0sparckallisto-0.46.1.tgz
NetBSD 9.0x86_64kallisto-0.46.1.tgz
NetBSD 9.0x86_64kallisto-0.46.1.tgz
NetBSD 9.0x86_64kallisto-0.46.1.tgz
NetBSD 9.0x86_64kallisto-0.46.1.tgz
NetBSD 9.0x86_64kallisto-0.46.1.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.