biology/plink - The NetBSD Packages Collection

Whole-genome association analysis toolset

PLINK is a free, open-source whole genome association analysis
toolset, designed to perform a range of basic, large-scale
analyses in a computationally efficient manner.

The focus of PLINK is purely on analysis of genotype/phenotype
data, so there is no support for steps prior to this (e.g. study
design and planning, generating genotype or CNV calls from raw
data). Through integration with gPLINK and Haploview, there is
some support for the subsequent visualization, annotation and
storage of results.

Build dependencies

pkgtools/cwrappers devel/gmake

Runtime dependencies

devel/libf2c math/lapack lang/gcc7 math/lapack lang/gcc7

Binary packages

OSArchitectureVersion
NetBSD 8.0i386plink-1.07.tgz
NetBSD 8.0i386plink-1.07nb1.tgz
NetBSD 8.0i386plink-1.07nb1.tgz
NetBSD 8.0powerpcplink-1.07.tgz
NetBSD 8.0powerpcplink-1.07nb1.tgz
NetBSD 8.0powerpcplink-1.07nb1.tgz
NetBSD 8.0x86_64plink-1.07nb1.tgz
NetBSD 8.0x86_64plink-1.07.tgz
NetBSD 8.0x86_64plink-1.07nb1.tgz
NetBSD 9.0i386plink-1.07.tgz
NetBSD 9.0i386plink-1.07nb1.tgz
NetBSD 9.0i386plink-1.07nb1.tgz
NetBSD 9.0powerpcplink-1.07nb1.tgz
NetBSD 9.0powerpcplink-1.07.tgz
NetBSD 9.0x86_64plink-1.07nb1.tgz
NetBSD 9.0x86_64plink-1.07nb1.tgz
NetBSD 9.0x86_64plink-1.07nb1.tgz
NetBSD 9.0x86_64plink-1.07nb1.tgz
NetBSD 9.0x86_64plink-1.07.tgz
NetBSD 9.0x86_64plink-1.07nb1.tgz
NetBSD 9.0x86_64plink-1.07nb1.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.