biology/trimmomatic - The NetBSD Packages Collection

Flexible read trimming tool for Illumina NGS data

Trimmomatic performs a variety of useful trimming tasks for illumina
paired-end and single ended data. The selection of trimming steps and their
associated parameters are supplied on the command line. It works with FASTQ
(using phred + 33 or phred + 64 quality scores, depending on the Illumina
pipeline used), either uncompressed or gzipp'ed FASTQ.

Build dependencies

pkgtools/cwrappers

Runtime dependencies

(none)

Binary packages

OSArchitectureVersion
NetBSD 8.0earmv7hfTrimmomatic-0.38.tgz
NetBSD 8.0earmv7hfTrimmomatic-0.38.tgz
NetBSD 8.0earmv7hfTrimmomatic-0.38.tgz
NetBSD 8.0i386Trimmomatic-0.38.tgz
NetBSD 8.0i386Trimmomatic-0.38.tgz
NetBSD 8.0i386Trimmomatic-0.38.tgz
NetBSD 8.0powerpcTrimmomatic-0.38.tgz
NetBSD 8.0powerpcTrimmomatic-0.38.tgz
NetBSD 8.0powerpcTrimmomatic-0.38.tgz
NetBSD 8.0x86_64Trimmomatic-0.38.tgz
NetBSD 8.0x86_64Trimmomatic-0.38.tgz
NetBSD 8.0x86_64Trimmomatic-0.38.tgz
NetBSD 9.0aarch64Trimmomatic-0.38.tgz
NetBSD 9.0aarch64Trimmomatic-0.38.tgz
NetBSD 9.0aarch64Trimmomatic-0.38.tgz
NetBSD 9.0alphaTrimmomatic-0.38.tgz
NetBSD 9.0alphaTrimmomatic-0.38.tgz
NetBSD 9.0alphaTrimmomatic-0.38.tgz
NetBSD 9.0earmTrimmomatic-0.38.tgz
NetBSD 9.0earmv6hfTrimmomatic-0.38.tgz
NetBSD 9.0earmv6hfTrimmomatic-0.38.tgz
NetBSD 9.0earmv6hfTrimmomatic-0.38.tgz
NetBSD 9.0earmv6hfTrimmomatic-0.38.tgz
NetBSD 9.0earmv7hfTrimmomatic-0.38.tgz
NetBSD 9.0earmv7hfTrimmomatic-0.38.tgz
NetBSD 9.0earmv7hfTrimmomatic-0.38.tgz
NetBSD 9.0earmv7hfTrimmomatic-0.38.tgz
NetBSD 9.0i386Trimmomatic-0.38.tgz
NetBSD 9.0i386Trimmomatic-0.38.tgz
NetBSD 9.0i386Trimmomatic-0.38.tgz
NetBSD 9.0mips64ebTrimmomatic-0.38.tgz
NetBSD 9.0mips64ebTrimmomatic-0.38.tgz
NetBSD 9.0mips64ebTrimmomatic-0.38.tgz
NetBSD 9.0powerpcTrimmomatic-0.38.tgz
NetBSD 9.0powerpcTrimmomatic-0.38.tgz
NetBSD 9.0sparc64Trimmomatic-0.38.tgz
NetBSD 9.0sparc64Trimmomatic-0.38.tgz
NetBSD 9.0sparc64Trimmomatic-0.38.tgz
NetBSD 9.0sparc64Trimmomatic-0.38.tgz
NetBSD 9.0sparcTrimmomatic-0.38.tgz
NetBSD 9.0sparcTrimmomatic-0.38.tgz
NetBSD 9.0sparcTrimmomatic-0.38.tgz
NetBSD 9.0x86_64Trimmomatic-0.38.tgz
NetBSD 9.0x86_64Trimmomatic-0.38.tgz
NetBSD 9.0x86_64Trimmomatic-0.38.tgz
NetBSD 9.0x86_64Trimmomatic-0.38.tgz
NetBSD 9.0x86_64Trimmomatic-0.38.tgz
NetBSD 9.0x86_64Trimmomatic-0.38.tgz
NetBSD 9.0x86_64Trimmomatic-0.38.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.