biology/vsearch - The NetBSD Packages Collection

Versatile open-source tool for metagenomics

VSEARCH supports de novo and reference based chimera detection,
clustering, full-length and prefix dereplication, rereplication,
reverse complementation, masking, all-vs-all pairwise global
alignment, exact and global alignment searching, shuffling,
subsampling and sorting. It also supports FASTQ file analysis,
filtering, conversion and merging of paired-end reads.

The aim of this project is to create an alternative to the USEARCH
tool developed by Robert C. Edgar (2010).

Build dependencies

pkgtools/cwrappers devel/automake devel/autoconf devel/gmake

Runtime dependencies

(none)

Binary packages

OSArchitectureVersion
NetBSD 8.0x86_64vsearch-2.13.4.tgz
NetBSD 8.0x86_64vsearch-2.13.4.tgz
NetBSD 8.0x86_64vsearch-2.13.4.tgz
NetBSD 9.0aarch64vsearch-2.13.4.tgz
NetBSD 9.0aarch64vsearch-2.13.4.tgz
NetBSD 9.0aarch64vsearch-2.13.4.tgz
NetBSD 9.0x86_64vsearch-2.13.4.tgz
NetBSD 9.0x86_64vsearch-2.13.4.tgz
NetBSD 9.0x86_64vsearch-2.13.4.tgz
NetBSD 9.0x86_64vsearch-2.13.4.tgz
NetBSD 9.0x86_64vsearch-2.13.4.tgz
NetBSD 9.0x86_64vsearch-2.13.4.tgz
NetBSD 9.0x86_64vsearch-2.13.4.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.