The chip-seq meta-package provides the core tools needed for performing a typical ChIP-Seq differential accessibility analysis, including adapter trimming, quality control, alignment, peak calling, and identification of differentially accessible peaks. Researchers may want additional tools for data manipulation, gene ontology, etc.
| OS | Architecture | Version |
|---|---|---|
| NetBSD 10.0_BETA | x86_64 | chip-seq-1.1nb1.tgz |
| NetBSD 8.0 | x86_64 | chip-seq-1.1nb1.tgz |
| NetBSD 8.0 | x86_64 | chip-seq-1.1.tgz |
| NetBSD 9.0 | x86_64 | chip-seq-1.1nb1.tgz |
| NetBSD 9.0 | x86_64 | chip-seq-1.1.tgz |
| NetBSD 9.3 | x86_64 | chip-seq-1.1.tgz |
| NetBSD 9.3 | x86_64 | chip-seq-1.1.tgz |
Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.
The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.
Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.
Problem reports, updates or suggestions for this package should be reported with send-pr.