biology/chip-seq - The NetBSD Packages Collection

Core tools needed for ChIP-Seq analysis

The chip-seq meta-package provides the core tools needed for performing
a typical ChIP-Seq differential accessibility analysis, including
adapter trimming, quality control, alignment, peak calling, and
identification of differentially accessible peaks.  Researchers may
want additional tools for data manipulation, gene ontology, etc.

Build dependencies

pkgtools/mktools pkgtools/cwrappers

Runtime dependencies

biology/fastq-trim biology/fastqc biology/biolibc-tools biology/gffread biology/bwa biology/bowtie2 biology/samtools biology/igv biology/py-macs2 biology/fasda biology/peak-classifier www/webbrowser lang/python311 lang/python311

Binary packages

OSArchitectureVersion
NetBSD 10.0_BETAx86_64chip-seq-1.1nb1.tgz
NetBSD 8.0x86_64chip-seq-1.1nb1.tgz
NetBSD 8.0x86_64chip-seq-1.1.tgz
NetBSD 9.0x86_64chip-seq-1.1nb1.tgz
NetBSD 9.0x86_64chip-seq-1.1.tgz
NetBSD 9.3x86_64chip-seq-1.1.tgz
NetBSD 9.3x86_64chip-seq-1.1.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.